PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10372
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 605aa    MW: 62719.6 Da    PI: 9.8098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10372genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29238297159
               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg H h+
  EMT10372 238 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAtGCPVRKQVQRCAEDMSILITTYEGAHSHP 297
               58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-31223297IPR003657WRKY domain
SuperFamilySSF1182902.48E-26231298IPR003657WRKY domain
PROSITE profilePS5081127.669233299IPR003657WRKY domain
SMARTSM007741.1E-35238298IPR003657WRKY domain
PfamPF031068.8E-26239297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MIKGDQRQLS GHEDRLKDQM RDDHRASDGN FFKFLQNQSS AKKEAQEDKI ASTRAEMGEV  60
RKENERLKTM LSRMVEDHRS LQKQFDVLHQ QGRGKNLAVL SLEHTSPADG VKDPRFVALR  120
LGTSASASTS RQNMGEENRT GSNNPDGKGV SLGLSSGCKA VGAAGQTEMK AQPDVLTLSP  180
GGSSEEDAAT ETTTTSSKAT KNPRSTGGGT EAEEEVAQQP LAKKARVSVR ARCDTATMND  240
GCQWRKYGQK ISKGNPCPRA YYRCTVATGC PVRKQVQRCA EDMSILITTY EGAHSHPLSA  300
SATAMASTTS AAASMLMSGS STSLGFPSAA SSLHGLRFGL PATATDASSS QLGGRPFFLP  360
AGAGASISAT PSYPTITLDL TSQAASQQAF SLSNSNRFSS SFTSPHGHRY PSTSFSFSGS  420
GASSLPGATA WPAGVGSYLT YGSPSGAPYN GAGKSSFEAA LSGINGRQQA SLASLYQPAQ  480
VQQRAAQLSG GVTGTAAPIV LTDTIAKAIT TDPGFHTALA AAITSYVGKP AAGGRKGLEW  540
GEHLGLGPSS AAGSSALLAR ASSTGVAQSG SPNGKMSFLQ PSLALWGSTS ATASTSPVKS  600
REHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A7e-202383001778Probable WRKY transcription factor 4
1wj2_A7e-202383001778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485550.0AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964541.11e-176PREDICTED: probable WRKY transcription factor 72
TrEMBLM8B0T60.0M8B0T6_AEGTA; Putative WRKY transcription factor 72
STRINGMLOC_60283.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-50WRKY DNA-binding protein 61